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Cooling nonlinear lattices toward localisation
Chaos - Focus issue "Nonlinear localised modes; Fundamental Concepts and Applications",
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A Quantum Perturbative Pair Distribution for determining interatomic potentials from EXAFS
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Freezing Immunoglobulins to see them move
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Dynamics of Antibodies from Cryo-Electron Tomography
Biophys. Chemistry , 115(2-3) 235-240 (2005)
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Statistical analysis of low-complexity sequences in the human genome
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The anti-FPU problem
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Slow energy relaxation of macromolecules and nano-clusters in solution
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Functional Dynamics of PDZ Binding Domains: a Normal Mode Analysis
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Topological analysis of a network of periodic genes in the cell-cycle of Schizosaccharomyces Pombe
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Diffusion-limited unbinding of small peptides from PDZ domains
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Resolving the geometry of biomolecules imaged by cryo electron tomography
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A dynamical study of antibody-antigen encounter reactions
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Discrete breathers in nonlinear network models of proteins
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Surface effects in nonlinear distributed systems: slow relaxation and spontaneous emergence of localized coherent modes
invited book chapter for "New Research on Nonlinear Phenomena", T. Perlidze ed.
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Discrete breathers in protein structures
Physical Biology - 5, 026001 (2008)
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Heat wave propagation in a nonlinear chain
Physical Review B - 79, 094306 (2009)
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Temperature dependence of normal mode reconstructions of protein dynamics
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Long-range energy transfer in proteins
Physical Biology - 6 , 046014 (2009)
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Energy transfer in nonlinear network models of proteins
Europhysics Letters - 88 , 68001 (2009)
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On inconsistent entities. A reply to Colyvan
Philosophical Studies - 150, issue 2, 301-311 (2010)
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Vibrational entropy and the structural organization of proteins
European Physical Journal (EPJ) E - 33(1), 89-96 (2010)
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Diffusion-limited reactions in crowded environments
Physical Review Letters - 105, 120601 (2010)
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Huang-Xiang Zhou, "Speeding up in a crowd", Physics - 3, 77 (2010)
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Inertial effects in diffusion-limited reactions
Journal of Physics C; Condensed Matter - 22, 104116 (2010)
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A simple Monte Carlo model for crowd dynamics
Physical Review E - 82, 02611 (2010)
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Breather-mediated energy transfer in proteins
Discrete and Continuous Dynamical Systems, Series S (DCDS) - 4(5), 1247 (2011)
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Discrete breathers in a realistic coarse-grained model of proteins
Physical Biology - 8, 046008 (2011)
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Crowding, intermolecular interactions, and shear-flow effects in the diffusion model of chemical reactions
Journal of Physical Chemistry - 115(22), 7383-7396 (2011)
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Disordered proteins and network disorder in network descriptions of protein structure, dynamics and function. Hypotheses and a comprehensive review
Current Protein and Peptide Science - 13(1), 9-33 (2012)
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First order coil-to-globule transition driven by vibrational entropy
Nature Communications - 3, 1065 (2012)
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Absence of thermalization for systems with long-range interactions coupled to a thermal bath
Physical Review E - 87 , 042110 (2013)
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Structural Relaxation Dynamics and Annealing Effects of Sodium Silicate Glass
Journal of Physical Chemistry B - 117 , 5757-5764 (2013)
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Irreversible bimolecular reactions with inertia: from the trapping to the target setting at finite densities
Journal of Physics C - Condensed Matter - 25, 245101 (2013)
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Check out the news item at IOPSCIENCE.ORG
Diffusion-limited reactions in crowded environments: a local density approximation
Journal of Physics C - Condensed Matter - 25, 375104 (2013)
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Heating rate effect on the activation of viscoelastic relaxation in silicate glasses
Physics Procedia - 48, 125-131 (2013)
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Macromolecular crowding: chemistry and physics meet biology
(Ascona, Switzerland, 10-14 June 2012)
Physical Biology - 10, 040301 (2013)
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Persistent random walk with exclusion: a model for pulse propagation in dense media
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Diffusion of tagged particles in a crowded medium
Europhys. Letters - 107, 20006 (2014)
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Nonlinear excitations match correlated motions unveiled by NMR in proteins: a new perspective on allosteric cross-talk
Physical Biology - 11, 036003 (2014)
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Dissecting the Effects of Concentrated Carbohydrate Solutions on Protein Diffusion, Hydration and Internal Dynamics
Journal of Physical Chemistry B - 118(20), 5310-5321 (2014)
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On the role of disorder in catalysis driven by discrete breathers
Letters on Materials - 4(4), 273-278 (2014)
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Diffusion-influenced reactions in a hollow nano-reactor with a circular hole
Physical Chemistry Chemical Physics - 17, 10417-10425 (2015)
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Synergistic Rate Boosting of Collagen Fibrillogenesis in Heterogeneous Mixtures of Crowding Agents
Journal of Physical Chemistry B - 119(12), 4350-4358 (2015)
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Optimal search strategies on complex multi-linked networks
Scientific Reports - 5, Article/DOI number: 10.1038/srep09869 (2015)
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Cutoff lensing: predicting catalytics sites in enzymes
Scientific Reports - 5, Article number: 14874 (2015)
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Transport of quantum excitations coupled to spatially extended nonlinear many-body systems
New Journal of Physics - 17, 113030 (2015)
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Conformation-controlled binding kinetics of antibodies
Scientific Reports - 6, Article number: 18976 (2016)
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Theory of diffusion-influenced reactions in complex geometries
Physical Chemistry Chemical Physics - 18, 15950-15954 (2016)
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Reaction rate of a composite core-shell nanoreactor with multiple, spatially distributed embedded nano-catalysts
Physical Chemistry Chemical Physics - 18, 20758-20767 (2016)
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Macroscopic Transport Equations in Many-Body Systems from Microscopic Exclusion Processes in Disordered Media: A Review
Front. Phys. , 03 August 2016
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Simulation and Theory of Antibody Binding to Crowded Antigen-Covered Surfaces
Plos Comp. Biol. - 12(3), e1004752-- (2016)
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Exciton transport in the PE545 complex: insight from atomistic QM/MM-based quantum master equations and elastic network models
Physical Biology - 14 066001 (2017)
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Point-particle method to compute diffusion-limited cellular uptake
Physical Review E - 97 023301 (2018)
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Catalysis by metallic nanoparticles in solution: Thermosensitive microgels as nanoreactors
Z. Phys. Chemie - 232(5-6) 773-803 (2018)
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Hopping in the crowd to unveil network topology
Physical Review Letters - 120 158301 (2018)
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Diffusion to capture and the concept of diffusive interactions
Chemical kinetics beyond the textbook - G. Oshanin ed., World Scientific (2018)
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Wavelet imaging of transient energy localization in nonlinear systems at thermal equilibrium: the case study of NaI crystals at high temperature
Physical Review B - 99 024307 (2019)
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Diffusion-controlled reactions on non-spherical partially absorbing axisymmetric surfaces
Physical Chemistry Chemical Physics 21 (46) 25896-25906 (2019)
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Universality of fold-encoded localized vibrations in enzymes
Scientific Reports 9(1) Article number: 12835 (2019)
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Crowding-induced Uncompetitive Inhibition of Lactate Dehydrogenase: Role of Entropic Pushing
J. Phys. Chem. B 124(5) 727-734 (2020)
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Dephasing-assisted macrospin transport
Entropy 22(2), 210 (2020)
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Analysis and forecast of COVID-19 spreading in China, Italy and France
Chaos, Solitons and Fractals 137 109761 (2020)
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Mesoscale computational protocols for the design of highly cooperative bivalent macromolecules
Scientific Reports 10 Article number: 7992(2020)
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Polyethylene glycol crowding effect on hyaluronidase activity monitored by capillary electrophoresis
Analytical and Bioanalytical Chemistry 412 4195-4207(2020)
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COVID-19: The unreasonable effectiveness of simple models
Chaos, Solitons & Fractals: X 5 100034 (2020)
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Tracer diffusion in crowded solutions of sticky polymers
Physical Review E 102 032618 (2020)
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Ficoll as testing material for diffusion weighted imaging-quality assurance phantoms
Magnetic Resonance Imaging 76 1-7 (2021)
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Kinetic theory of hyaluronan cleavage by bovine testicular hyaluronidase in standard and crowded environments
Biochimica et Biophysica Acta (BBA) - General Subjects 1865(3) 129837 (2021)
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Dissipation-driven selection of states in non-equilibrium chemical networks
Communications Chemistry 4 16 (2021)
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Equilibrium and non-equilibrium furanose selection in the ribose isomerisation network
Nature Communications 12 2749 (2021)
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Mechanisms for transient localization in a diatomic nonlinear chain
Communications in Nonlinear Science and Numerical Simulation 102 105913 (2021)
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