Publications concerning MMTK

Articles about MMTK and about computational methods implemented in MMTK.

The Molecular Modeling Toolkit: A New Approach to Molecular Simulations — by Konrad Hinsen — last modified 2007-02-22 11:57

The main publication about MMTK. Please cite this in your publications if you use MMTK.

Projection methods for the analysis of complex motions in macromolecules — by Konrad Hinsen — last modified 2007-02-22 13:30

Implemented in MMTK.Subspace.

Harmonicity in slow protein dynamics — by Konrad Hinsen — last modified 2007-02-22 13:32

Describes MMTK.ForceField.CalphaForceField and MMTK.NormalModes.BrownianModes.

Inelastic neutron scattering from damped collective vibrations of macromolecules — by Konrad Hinsen — last modified 2007-02-22 13:33

Describes algorithms used in MMTK.NormalModes.BrownianModes.

A simplified force field for describing vibrational protein dynamics over the whole frequency range — by Konrad Hinsen — last modified 2007-02-22 13:34

Describes MMTK.ForceFields.HarmonicForceField.

Analysis of domain motions by approximate normal mode calculations — by Konrad Hinsen — last modified 2007-02-22 13:37

Describes MMTK.ForceFields.DeformationForceField.